Technologies / Application Certified Platforms / AMBER Certified MD Systems

AMBER CERTIFIED MD SYSTEMS

GPU Accelerated for Faster AMBER Simulation

AMBER is a key application in molecular dynamics used to simulate biocatalysis and the interaction between drug candidates and protein receptors. An exemplary feature of AMBER is the ability to use NVIDIA GPUs to massively accelerate complex molecular simulations. This massively enhances sampling efficiency, improves research accuracy, enables more advanced science, and speeds up the research process.



AMBER 18 Now Available in Exxact Systems

The AMBER 18 package builds on AmberTools18 by adding the pmemd program, which resembles the sander (molecular dynamics) code in AmberTools, but provides better performance on multiple CPUs, and dramatic speed improvements on GPUs.



Exxact AMBER Certified GPU Systems

The main driving force behind the AMBER GPU development has been to bring supercomputer power and performance to individual desktops with an economical price, high power efficiency and designed to benefit the widest range of researchers. Exxact has teamed up with the AMBER development team to design a series of AMBER GPU computing solutions that provide the optimum price performance for AMBER users.



All Exxact AMBER systems come preinstalled with the latest version and updates. Each system is fully turnkey and are ready to run out of the box and provide guaranteed performance. This provides a solution for scientists to acquire optimal workstations and clusters for running GPU AMBER (and regular CPU AMBER simulations as well).

AMBER Certified

Entry-Level Workstation
  • 1x Intel Xeon E5-2620 v4
  • 2x NVIDIA GTX 1080 Ti
  • 4x 8GB Memory
  • 1x 512GB SSD
  • AMBER + AMBER Tools Installation
  • 3 Year Warranty
STARTING AT

$4,999

AMBER Certified

Mid-Level Workstation
  • 2x Intel Xeon E5-2620 v4
  • 4x NVIDIA GTX 1080 Ti
  • 8x 8GB Memory
  • 1x 512GB SSD / 1x 4TB HDD
  • AMBER + AMBER Tools Installation
  • 3 Year Warranty
STARTING AT

$7,999

AMBER Certified

High-Level Workstation
  • 2x Intel Xeon E5-2620 v4
  • 4x NVIDIA GTX 1080 Ti
  • 8x 16GB Memory
  • 1x 512GB SSD / 1x 4TB HDD
  • AMBER + AMBER Tools Installation
  • 3 Year Warranty
STARTING AT

$9,499

AMBER 16 Exxact Optimized

Exxact AMBER Certified AMBER MD Workstations and Clusters, in addition to being numerically validated using custom GPU validation suites, also come with an optimized version of AMBER 16 that has been developed in a collaboration between lead AMBER developer Ross Walker, NVIDIA and Exxact. The combination of these optimizations and Exxact hardware with NVIDIA Maxwell (GTX 980, GTX 980TI, Titan X, M40 and M60) provides performance for all AMBER PMEMD GPU simulations, explicit solvent and implicit solvent, that is between 15 and 25% faster than achievable on systems from other vendors while providing bitwise identical results.



All Exxact certified AMBER MD Workstations and Sim Clusters ordered from Dec 19th 2015 onwards ship with AMBER 16 precompiled with these optimizations and include a full benchmark report.



» Check The Exxact Performance Advantage

Working closely with Exxact to develop certified AMBER GPU systems has been apleasure. Their flexibility and responsiveness has allowed us to jointly optimizethese computing platforms that, I believe, deliver transformative increases inperformance for molecular dynamics simulation to every lab without thecomplexities of needing to validate the GPU computing hardware.

- Ross Walker, AMBER Principal Developer, San Diego Supercomputer Center, UC San Diego

Exxact AMBER Certified MD System Highlights

As the sole provider of AMBER Certified MD Systems, Exxact develops turnkey solutions in collaboration with key AMBER developers toprovide value-add systems for GPU accelerated Molecular Dynamics simulations.



  • Designed to meet the requirements for atomistic molecular dynamics simulations
  • Guaranteed to be optimized to meet or exceed the published performance numbers
  • Preinstalled AMBER GPU computing solutions, designed in collaboration and genuinely certified by AMBER Developers
  • Includes example job submission scripts, benchmarks, fully validated test suite and latest software patches for quick implementation
  • Save time installing, optimizing, benchmarking and validating and instead do more science
  • Fully customizable to meet your budget
Exxact Tensor TS2-673917-AMB 2U 2x Intel Xeon processor server - AMBER Certified MD system
MPN: TS2-673917-AMB
  • Rack Height: 2U
  • Processor Supported: 2x Intel Xeon Scalable Family
  • Drive Bays: 8x 3.5" Hot-Swap (2x NVMe)
  • Supports up to 4x Double-Wide cards
Contact sales for pricing
Exxact Tensor TS4-1598415-AMB 4U 2x Intel Xeon Scalable family - AMBER Certified MD System
MPN: TS4-1598415-AMB
  • Rack Height: 4U
  • Processor Supported: 2x Intel Scalable Family
  • Drive Bays: 14x 2.5" Hot-Swap
  • Supports up to 8x Double-Wide cards
Contact sales for pricing
Exxact Tensor TS4-1686564-AMB 4U 2x Intel Xeon processor server - AMBER Certified MD system
MPN: TS4-1686564-AMB
  • Form Factor: 4U Rackmountable / Tower
  • Processor: 2x Intel Xeon Scalable family
  • Drive Bays: 4x 3.5"/2.5" Hot-Swap
  • Up to 5x Double-Wide cards
Contact sales for pricing
Exxact Tensor TS4-1709194-AMB 4U 2x Intel Xeon processor server - AMBER Certified MD system
MPN: TS4-1709194-AMB
  • Rack Height: 4U
  • Processor: 2x Intel Xeon Scalable family
  • Drive Bays: 14x 2.5" Hot-Swap
  • Up to 10x Double-Wide cards
Contact sales for pricing
Exxact Tensor TS4-264546-AMB 4U 2x Intel Xeon processor server - AMBER Certified MD System
MPN: TS4-264546-AMB
  • Rack Height: 4U
  • Processor Supported: 2x Intel E5-2600 v3/v4
  • Drive Bays: 24x 2.5" Hot-Swap
  • Supports up to 10x Double-Wide GPUs in a Single Root Complex
Contact sales for pricing
Exxact Tensor TS4-264563-AMB 4U 2x Intel Xeon processor server - AMBER Certified MD system
MPN: TS4-264563-AMB
  • Rack Height: 4U
  • Processor Supported: 2x Intel E5-2600 v3/v4
  • Drive Bays: 8x 3.5" Hot-Swap
  • Supports up to 4x Double-Wide GPUs
Contact sales for pricing
Exxact Tensor TS4-672511-AMB 4U 2x Intel Xeon processor server - AMBER Certified MD system
MPN: TS4-672511-AMB
  • Rack Height: 4U
  • Processor Supported: 2x Intel Xeon Scalable Family
  • Drive Bays: 8x 3.5" Hot-Swap
  • Supports up to 4x Double-Wide GPUs
Contact sales for pricing
Exxact Tensor TWS-1686525-AMB 2x Intel Xeon processor workstation - AMBER Certified MD system
MPN: TWS-1686525-AMB
  • Form Factor: 4U Rackmountable / Tower
  • Processor: 2x Intel Xeon Scalable family
  • Drive Bays: 4x 3.5"/2.5" Hot-Swap
  • Up to 5x Double-Wide cards
Contact sales for pricing
Exxact Tensor TWS-289061-AMB 2x Intel Xeon processor workstation - AMBER Certified MD system
MPN: TWS-289061-AMB
  • Form Factor: 4U Rackmountable / Tower
  • Processor: 2x Intel Xeon E5-2600 v3/v4
  • Drive Bays: 8x 3.5" Hot-Swap
  • Supports up to 4x Double-Wide cards
Contact sales for pricing
Exxact Tensor TWS-773645-AMB 2x Intel Xeon processor workstation - AMBER Certified MD system
MPN: TWS-773645-AMB
  • Form Factor: 4U Rackmountable / Tower
  • Processor: 2x Intel Xeon Scalable family
  • Drive Bays: 8x 3.5" Hot-Swap
  • Up to 4x Double-Wide cards
Contact sales for pricing
Exxact Valence VWS-1690441-AMB 1x Intel Xeon processor workstation - AMBER Certified MD system
MPN: VWS-1690441-AMB
  • Form Factor: Mid-Tower
  • Processor: 1x Intel Xeon processor W family
  • Drive Bays: 4x 3.5" Internal
  • Supports up to 2x Double-Wide cards
Contact sales for pricing
Exxact Valence VWS-264615-AMB 1x Intel Xeon processor workstation - AMBER Certified MD system
MPN: VWS-264615-AMB
  • Form Factor: Mid-Tower
  • Processor: 1x Intel Xeon E5-2600 v3/v4, Xeon E5-1600 v3/v4, Core i7
  • Drive Bays: 4x 3.5" Internal
  • Supports up to 2x Double-Wide cards
Contact sales for pricing